TitleDateAuthorsDOI
Site- and allele-specific polycomb dysregulation in T-cell leukaemia2015-01-01Navarro, JM; Touzart, A; Pradel, LC; Loosveld, M; Koubi, M; Fenouil, R; Le Noir, S; Maqbool, MA; Morgado, E; Gregoire, C; Jaeger, S; Mamessier, E; Pig (2015). Site- and allele-specific polycomb dysregulation in T-cell leukaemia. Nature Communications, 6(), 6094-. DOI: 10.1038/ncomms7094https://doi.org/10.1038/ncomms7094
Site-specific methylation and acetylation of lysine residues in the C-terminal domain (CTD) of RNA polymerase II2015-01-01Voss, K; Forné, I; Descostes, N; Hintermair, C; Schüller, R; Maqbooi, MA; Heidemann, M; Flatley, A; Imhof, A; Gut, M; Gut, I; Kremmer, E; Andrau, JC; (2015). Site-specific methylation and acetylation of lysine residues in the C-terminal domain (CTD) of RNA polymerase II. Transcription, 6(5), 91-101. DOI: 10.1080/21541264.2015.1114983https://doi.org/10.1080/21541264.2015.1114983
The Genome 10K Project: A Way Forward2015-01-01Koepfli, KP; Paten, B; O'Brien, SJ (2015). The Genome 10K Project: A Way Forward. Annual Review Of Animal Biosciences, 3(), 57-111. DOI: 10.1146/annurev-animal-090414-014900https://doi.org/10.1146/annurev-animal-090414-014900
Efficient alignment of illumina-like high-throughput sequencing reads with the GEnomic multi-tool (GEM) mapper2015-01-01Marco-Sola S; Ribeca P (2015). Efficient alignment of illumina-like high-throughput sequencing reads with the GEnomic multi-tool (GEM) mapper. Current Protocols In Bioinformatics, 2015(), 11.13.1-11.13.20. DOI: 10.1002/0471250953.bi1113s50https://doi.org/10.1002/0471250953.bi1113s50
Prehistoric genomes reveal the genetic foundation and cost of horse domestication2014-12-30Schubert, M; Jónsson, H; Chang, D; Sarkissian, CD; Ermini, L; Ginolhac, A; Albrechtsen, A; Dupanloup, I; Foucal, A; Petersen, B; Fumagalli, M; Raghava (2014). Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proceedings Of The National Academy Of Sciences Of The United States Of America, 111(52), E5661-E5669. DOI: 10.1073/pnas.1416991111https://doi.org/10.1073/pnas.1416991111
De novo assembly, characterization and functional annotation of Senegalese sole (Solea senegalensis) and common sole (Solea solea) transcriptomes: integration in a database and design of a microarray2014-11-03Benzekri, H; Armesto, P; Cousin, X; Rovira, M; Crespo, D; Merlo, MA; Mazurais, D; Bautista, R; Guerrero-Fernández, D; Fernandez-Pozo, N; Ponce, M; Inf (2014). De novo assembly, characterization and functional annotation of Senegalese sole (Solea senegalensis) and common sole (Solea solea) transcriptomes: integration in a database and design of a microarray. Bmc Genomics, 15(1), 952-. DOI: 10.1186/1471-2164-15-952https://doi.org/10.1186/1471-2164-15-952
Comprehensive characterization of complex structural variations in cancer by directly comparing genome sequence reads2014-11-01Moncunill, V; Gonzalez, S; Beà, S; Andrieux, LO; Salaverria, I; Royo, C; Martinez, L; Puiggròs, M; Segura-Wang, M; Stütz, AM; Navarro, A; Royo, R; Gel (2014). Comprehensive characterization of complex structural variations in cancer by directly comparing genome sequence reads. Nature Biotechnology, 32(11), 1106-1112. DOI: 10.1038/nbt.3027https://doi.org/10.1038/nbt.3027
Genomic Landscape of Ewing Sarcoma Defines an Aggressive Subtype with Co-Association of STAG2 and TP53 Mutations2014-11-01Tirode, F; Surdez, D; Ma, XT; Parker, M; Le Deley, MC; Bahrami, A; Zhang, ZJ; Lapouble, E; Grossetête-Lalami, S; Rusch, M; Reynaud, S; Rio-Frio, T; He (2014). Genomic Landscape of Ewing Sarcoma Defines an Aggressive Subtype with Co-Association of STAG2 and TP53 Mutations. Cancer Discovery, 4(11), 1342-1353. DOI: 10.1158/2159-8290.CD-14-0622https://doi.org/10.1158/2159-8290.CD-14-0622
Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus x domestica Borkh)2014-10-10Bianco, L; Cestaro, A; Sargent, DJ; Banchi, E; Derdak, S; Di Guardo, M; Salvi, S; Jansen, J; Viola, R; Gut, I; Laurens, F; Chagné, D; Velasco, R; van (2014). Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus x domestica Borkh). Plos One, 9(10), e110377-. DOI: 10.1371/journal.pone.0110377https://doi.org/10.1371/journal.pone.0110377
A Comprehensive DNA Methylation Profile of Epithelial-to-Mesenchymal Transition2014-10-01Carmona, FJ; Davalos, V; Vidal, E; Gomez, A; Heyn, H; Hashimoto, Y; Vizoso, M; Martinez-Cardus, A; Sayols, S; Ferreira, HJ; Sánchez-Mut, JV; Morán, S; (2014). A Comprehensive DNA Methylation Profile of Epithelial-to-Mesenchymal Transition. Cancer Research, 74(19), 5608-5619. DOI: 10.1158/0008-5472.CAN-13-3659https://doi.org/10.1158/0008-5472.CAN-13-3659
Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation2014-10-01Le Dily, F; Baù, D; Pohl, A; Vicent, GP; Serra, F; Soronellas, D; Castellano, G; Wright, RHG; Ballare, C; Filion, G; Marti-Renom, MA; Beato, M (2014). Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation. Genes & Development, 28(19), 2151-2162. DOI: 10.1101/gad.241422.114https://doi.org/10.1101/gad.241422.114
Variation in genomic landscape of clear cell renal cell carcinoma across Europe2014-10-01Scelo, G; Riazalhosseini, Y; Greger, L; Letourneau, L; Gonzàlez-Porta, M; Wozniak, MB; Bourgey, M; Harnden, P; Egevad, L; Jackson, SM; Karimzadeh, M; (2014). Variation in genomic landscape of clear cell renal cell carcinoma across Europe. Nature Communications, 5(5135), 5135-. DOI: 10.1038/ncomms6135https://doi.org/10.1038/ncomms6135
Differential MicroRNA Expression Profile between Stimulated PBMCs from HIV-1 Infected Elite Controllers and Viremic Progressors2014-09-16Egaña-Gorroño, L; Escribà, T; Boulanger, N; Guardo, AC; León, A; Bargalló, ME; Garcia, F; Gatell, JM; Plana, M; Arnedo, M (2014). Differential MicroRNA Expression Profile between Stimulated PBMCs from HIV-1 Infected Elite Controllers and Viremic Progressors. Plos One, 9(9), e106360-. DOI: 10.1371/journal.pone.0106360https://doi.org/10.1371/journal.pone.0106360
Gibbon genome and the fast karyotype evolution of small apes2014-09-11Carbone, L; Harris, RA; Gnerre, S; Veeramah, KR; Lorente-Galdos, B; Huddleston, J; Meyer, TJ; Herrero, J; Roos, C; Aken, B; Anaclerio, F; Archidiacono (2014). Gibbon genome and the fast karyotype evolution of small apes. Nature, 513(7517), 195-+. DOI: 10.1038/nature13679https://doi.org/10.1038/nature13679
Gene Expansion Shapes Genome Architecture in the Human Pathogen Lichtheimia corymbifera: An Evolutionary Genomics Analysis in the Ancient Terrestrial Mucorales (Mucoromycotina)2014-08-14Schwartze, VU; Winter, S; Shelest, E; Marcet-Houben, M; Horn, F; Wehner, S; Linde, J; Valiante, V; Sammeth, M; Riege, K; Nowrousian, M; Kaerger, K; Ja (2014). Gene Expansion Shapes Genome Architecture in the Human Pathogen Lichtheimia corymbifera: An Evolutionary Genomics Analysis in the Ancient Terrestrial Mucorales (Mucoromycotina). Plos Genetics, 10(8), e1004496-. DOI: 10.1371/journal.pgen.1004496https://doi.org/10.1371/journal.pgen.1004496
The involvement of serotonin polymorphisms in autistic spectrum symptomatology2014-08-01Hervás, A; Toma, C; Romarís, P; Ribasés, M; Salgado, M; Bayes, M; Balmaña, N; Cormand, B; Maristany, M; Guijarro, S; Arranz, MJ (2014). The involvement of serotonin polymorphisms in autistic spectrum symptomatology. Psychiatric Genetics, 24(4), 158-163. DOI: 10.1097/YPG.0000000000000034https://doi.org/10.1097/YPG.0000000000000034
The common marmoset genome provides insight into primate biology and evolution2014-08-01Worley, KC; Warren, WC; Rogers, J; Locke, D; Muzny, DM; Mardis, ER; Weinstock, GM; Tardif, SD; Aagaard, KM; Archidiacono, N; Rayan, NA; Batzer, MA; Be (2014). The common marmoset genome provides insight into primate biology and evolution. Nature Genetics, 46(8), 850-857. DOI: 10.1038/ng.3042https://doi.org/10.1038/ng.3042
A revisit of high collision energy effects on collision-induced dissociation spectra using matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry (MALDI-LIFT-TOF/TOF): application to the sequencing of RNA/DNA chimeras2014-07-15Mauger, F; Tabet, JC; Gut, IG (2014). A revisit of high collision energy effects on collision-induced dissociation spectra using matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry (MALDI-LIFT-TOF/TOF): application to the sequencing of RNA/DNA chimeras. Rapid Communications In Mass Spectrometry, 28(13), 1433-1443. DOI: 10.1002/rcm.6913https://doi.org/10.1002/rcm.6913
Next generation sequencing gives an insight into the characteristics of highly selected breeds versus non-breed horses in the course of domestication2014-07-04Metzger, J; Tonda, R; Beltran, S; Agueda, L; Gut, M; Distl, O (2014). Next generation sequencing gives an insight into the characteristics of highly selected breeds versus non-breed horses in the course of domestication. Bmc Genomics, 15(562), 562-. DOI: 10.1186/1471-2164-15-562https://doi.org/10.1186/1471-2164-15-562
Exome sequencing in multiplex autism families suggests a major role for heterozygous truncating mutations2014-07-01Toma, C; Torrico, B; Hervás, A; Valdés-Mas, R; Tristán-Noguero, A; Padillo, V; Maristany, M; Salgado, M; Arenas, C; Puente, XS; Bayés, M; Cormand, B (2014). Exome sequencing in multiplex autism families suggests a major role for heterozygous truncating mutations. Molecular Psychiatry, 19(7), 784-790. DOI: 10.1038/mp.2013.106https://doi.org/10.1038/mp.2013.106