TitleDateAuthorsDOI
Relationship between genome and epigenome--challenges and requirements for future research2014-06-18Almouzni, G; Altucci, L; Amati, B; Ashley, N; Baulcombe, D; Beaujean, N; Bock, C; Bongcam-Rudloff, E; Bousquet, J; Braun, S; Bressac-de Paillerets, B; (2014). Relationship between genome and epigenome--challenges and requirements for future research. Bmc Genomics, 15(1), 487-. DOI: 10.1186/1471-2164-15-487https://doi.org/10.1186/1471-2164-15-487
Analysis of structural diversity in wolf-like canids reveals post-domestication variants2014-06-12Ramirez, O; Olalde, I; Berglund, J; Lorente-Galdos, B; Hernandez-Rodriguez, J; Quilez, J; Webster, MT; Wayne, RK; Lalueza-Fox, C; Vilà, C; Marques-Bon (2014). Analysis of structural diversity in wolf-like canids reveals post-domestication variants. Bmc Genomics, 15(465), 465-. DOI: 10.1186/1471-2164-15-465https://doi.org/10.1186/1471-2164-15-465
Whole-exome sequencing in splenic marginal zone lymphoma reveals mutations in genes involved in marginal zone differentiation2014-06-01Martínez, N; Almaraz, C; Vaqué, JP; Varela, I; Derdak, S; Beltran, S; Mollejo, M; Campos-Martin, Y; Agueda, L; Rinaldi, A; Kwee, I; Gut, M; Blanc, J; (2014). Whole-exome sequencing in splenic marginal zone lymphoma reveals mutations in genes involved in marginal zone differentiation. Leukemia, 28(6), 1334-1340. DOI: 10.1038/leu.2013.365https://doi.org/10.1038/leu.2013.365
RNA Sequencing Identifies Dysregulation of the Human Pancreatic Islet Transcriptome by the Saturated Fatty Acid Palmitate2014-06-01Cnop, M; Abdulkarim, B; Bottu, G; Cunha, DA; Igoillo-Esteve, M; Masini, M; Turatsinze, JV; Griebel, T; Villate, O; Santin, I; Bugliani, M; Ladriere, L (2014). RNA Sequencing Identifies Dysregulation of the Human Pancreatic Islet Transcriptome by the Saturated Fatty Acid Palmitate. Diabetes, 63(6), 1978-1993. DOI: 10.2337/db13-1383https://doi.org/10.2337/db13-1383
A Note on Exact Differences between Beta Distributions in Genomic (Methylation) Studies2014-05-13Raineri, E; Dabad, M; Heath, S (2014). A Note on Exact Differences between Beta Distributions in Genomic (Methylation) Studies. Plos One, 9(5), e97349-. DOI: 10.1371/journal.pone.0097349https://doi.org/10.1371/journal.pone.0097349
Tyrosine phosphorylation of RNA Polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells2014-05-09Descostes, N; Heidemann, M; Spinelli, L; Schüller, R; Maqbool, MA; Fenouil, R; Koch, F; Innocenti, C; Gut, M; Gut, I; Eick, D; Andrau, JC (2014). Tyrosine phosphorylation of RNA Polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells. Elife, 3(3), e02105-. DOI: 10.7554/eLife.02105https://doi.org/10.7554/eLife.02105
Mutations in CNTNAP1 and ADCY6 are responsible for severe arthrogryposis multiplex congenita with axoglial defects2014-05-01Laquérriere, A; Maluenda, J; Camus, A; Fontenas, L; Dieterich, K; Nolent, F; Zhou, J; Monnier, N; Latour, P; Gentil, D; Héron, D; Desguerres, I; Landr (2014). Mutations in CNTNAP1 and ADCY6 are responsible for severe arthrogryposis multiplex congenita with axoglial defects. Human Molecular Genetics, 23(9), 2279-2289. DOI: 10.1093/hmg/ddt618https://doi.org/10.1093/hmg/ddt618
Genomic analysis of the blood attributed to Louis XVI (1754-1793), king of France2014-04-24Olalde, I; Sánchez-Quinto, F; Datta, D; Marigorta, UM; Chiang, CWK; Rodríguez, JA; Fernández-Callejo, M; González, I; Montfort, M; Matas-Lalueza, L; C (2014). Genomic analysis of the blood attributed to Louis XVI (1754-1793), king of France. Scientific Reports, 4(), 4666-. DOI: 10.1038/srep04666https://doi.org/10.1038/srep04666
Structural studies of the sBBI/trypsin non-covalent complex using covalent modification and mass spectrometry2014-03-15Darii, E; Saravanamuthu, G; Gut, IG; Tabet, JC (2014). Structural studies of the sBBI/trypsin non-covalent complex using covalent modification and mass spectrometry. Rapid Communications In Mass Spectrometry, 28(5), 413-429. DOI: 10.1002/rcm.6797https://doi.org/10.1002/rcm.6797
New genes emerging for colorectal cancer predisposition2014-02-28Esteban-Jurado, C; Garre, P; Vila, M; Lozano, JJ; Pristoupilova, A; Beltrán, S; Abulí, A; Muñoz, J; Balaguer, F; Ocaña, T; Castells, A; Piqué, JM; Car (2014). New genes emerging for colorectal cancer predisposition. World Journal Of Gastroenterology, 20(8), 1961-1971. DOI: 10.3748/wjg.v20.i8.1961https://doi.org/10.3748/wjg.v20.i8.1961
Combined Genetic and High-Throughput Strategies for Molecular Diagnosis of Inherited Retinal Dystrophies2014-02-07de Castro-Miró, M; Pomares, E; Lorés-Motta, L; Tonda, R; Dopazo, J; Marfany, G; Gonzàlez-Duarte, R (2014). Combined Genetic and High-Throughput Strategies for Molecular Diagnosis of Inherited Retinal Dystrophies. Plos One, 9(2), e88410-. DOI: 10.1371/journal.pone.0088410https://doi.org/10.1371/journal.pone.0088410
Genetic heterogeneity of asthma phenotypes identified by a clustering approach2014-02-01Siroux, V; González, JR; Bouzigon, E; Curjuric, I; Boudier, A; Imboden, M; Anto, JM; Gut, I; Jarvis, D; Lathrop, M; Omenaas, ER; Pin, I; Wjst, M; Deme (2014). Genetic heterogeneity of asthma phenotypes identified by a clustering approach. European Respiratory Journal, 43(2), 439-452. DOI: 10.1183/09031936.00032713https://doi.org/10.1183/09031936.00032713
Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia2014-02-01Ferreira, PG; Jares, P; Rico, D; Gómez-López, G; Martínez-Trillos, A; Villamor, N; Ecker, S; González-Pérez, A; Knowles, DG; Monlong, J; Johnson, R; Q (2014). Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia. Genome Research, 24(2), 212-226. DOI: 10.1101/gr.152132.112https://doi.org/10.1101/gr.152132.112
Genome-wide copy number variation analysis in adult attention-deficit and hyperactivity disorder2014-02-01Ramos-Quiroga, JA; Sánchez-Mora, C; Casas, M; Garcia-Martinez, I; Bosch, R; Nogueira, M; Corrales, M; Palomar, G; Vidal, R; Coll-Tané, M; Bayés, M; Co (2014). Genome-wide copy number variation analysis in adult attention-deficit and hyperactivity disorder. Journal Of Psychiatric Research, 49(1), 60-67. DOI: 10.1016/j.jpsychires.2013.10.022https://doi.org/10.1016/j.jpsychires.2013.10.022
Divergent transcription is associated with promoters of transcriptional regulators2013-12-23Lepoivre, C; Belhocine, M; Bergon, A; Griffon, A; Yammine, M; Vanhille, L; Zacarias-Cabeza, J; Garibal, MA; Koch, F; Maqbool, MA; Fenouil, R; Loriod, (2013). Divergent transcription is associated with promoters of transcriptional regulators. Bmc Genomics, 14(1), 914-. DOI: 10.1186/1471-2164-14-914https://doi.org/10.1186/1471-2164-14-914
ASPic-GeneID: A lightweight pipeline for gene prediction and alternative isoforms detection2013-12-09Alioto, T; Picardi, E; Guigó, R; Pesole, G (2013). ASPic-GeneID: A lightweight pipeline for gene prediction and alternative isoforms detection. Biomed Research International, 2013(), 502827-. DOI: 10.1155/2013/502827https://doi.org/10.1155/2013/502827
Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy2013-12-01Balbás-Martínez, C; Sagrera, A; Carrillo-de-Santa-Pau, E; Earl, J; Márquez, M; Vazquez, M; Lapi, E; Castro-Giner, F; Beltran, S; Bayés, M; Carrato, A; (2013). Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy. Nature Genetics, 45(12), 1464-U221. DOI: 10.1038/ng.2799https://doi.org/10.1038/ng.2799
Systematic evaluation of spliced alignment programs for RNA-seq data2013-12-01Engström, PG; Steijger, T; Sipos, B; Grant, GR; Kahles, A; Rätsch, G; Goldman, N; Hubbard, TJ; Harrow, J; Guigó, R; Bertone, P (2013). Systematic evaluation of spliced alignment programs for RNA-seq data. Nature Methods, 10(12), 1185-+. DOI: 10.1038/nmeth.2722https://doi.org/10.1038/NMETH.2722
Assessment of transcript reconstruction methods for RNA-seq2013-12-01Steijger, T; Abril, JF; Engström, PG; Kokocinski, F; Hubbard, TJ; Guigó, R; Harrow, J; Bertone, P (2013). Assessment of transcript reconstruction methods for RNA-seq. Nature Methods, 10(12), 1177-+. DOI: 10.1038/nmeth.2714https://doi.org/10.1038/NMETH.2714
Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories2013-11-01't Hoen, PAC; Friedländer, MR; Almlöf, J; Sammeth, M; Pulyakhina, I; Anvar, SY; Laros, JFJ; Buermans, HPJ; Karlberg, O; Brännvall, M; den Dunnen, JT; (2013). Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories. Nature Biotechnology, 31(11), 1015-+. DOI: 10.1038/nbt.2702https://doi.org/10.1038/nbt.2702