TitleDateAuthorsDOI
A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics2015-06-23Romero, IG; Pavlovic, BJ; Hernando-Herraez, I; Zhou, X; Ward, MC; Banovich, NE; Kagan, CL; Burnett, JE; Huang, CH; Mitrano, A; Chavarria, CI; Ben-Nun, (2015). A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics. Elife, 4(e07103), e07103-29. DOI: 10.7554/eLife.07103https://doi.org/10.7554/eLife.07103
Analysis of Five Gene Sets in Chimpanzees Suggests Decoupling between the Action of Selection on Protein-Coding and on Noncoding Elements2015-06-01Santpere, G; Carnero-Montoro, E; Petit, N; Serra, F; Hvilsom, C; Rambla, J; Heredia-Genestar, JM; Halligan, DL; Dopazo, H; Navarro, A; Bosch, E (2015). Analysis of Five Gene Sets in Chimpanzees Suggests Decoupling between the Action of Selection on Protein-Coding and on Noncoding Elements. Genome Biology And Evolution, 7(6), 1490-1505. DOI: 10.1093/gbe/evv082https://doi.org/10.1093/gbe/evv082
Genomic characterization of mutant laboratory mouse strains by exome sequencing and annotation lift-over2015-05-06Derdak, S; Sabrautzki, S; de Angelis, MH; Gut, M; Gut, IG; Beltran, S (2015). Genomic characterization of mutant laboratory mouse strains by exome sequencing and annotation lift-over. Bmc Genomics, 16(351), 351-. DOI: 10.1186/s12864-015-1548-7https://doi.org/10.1186/s12864-015-1548-7
Disk-based compression of data from genome sequencing2015-05-01Grabowski, S; Deorowicz, S; Roguski, L (2015). Disk-based compression of data from genome sequencing. Bioinformatics, 31(9), 1389-1395. DOI: 10.1093/bioinformatics/btu844https://doi.org/10.1093/bioinformatics/btu844
Examining Phylogenetic Relationships Among Gibbon Genera Using Whole Genome Sequence Data Using an Approximate Bayesian Computation Approach2015-05-01Veeramah, KR; Woerner, AE; Johnstone, L; Gut, I; Gut, M; Marques-Bonet, T; Carbone, L; Wall, JD; Hammer, MF (2015). Examining Phylogenetic Relationships Among Gibbon Genera Using Whole Genome Sequence Data Using an Approximate Bayesian Computation Approach. Genetics, 200(1), 295-U575. DOI: 10.1534/genetics.115.174425https://doi.org/10.1534/genetics.115.174425
Assessing the limits of restraint-based 3D modeling of genomes and genomic domains2015-04-20Trussart, M; Serra, F; Baù, D; Junier, I; Serrano, L; Marti-Renom, MA (2015). Assessing the limits of restraint-based 3D modeling of genomes and genomic domains. Nucleic Acids Research, 43(7), 3465-3477. DOI: 10.1093/nar/gkv221https://doi.org/10.1093/nar/gkv221
Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding2015-04-10Xue, YL; Prado-Martinez, J; Sudmant, PH; Narasimhan, V; Ayub, Q; Szpak, M; Frandsen, P; Chen, Y; Yngvadottir, B; Cooper, DN; de Manuel, M; Hernandez-R (2015). Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding. Science, 348(6231), 242-245. DOI: 10.1126/science.aaa3952https://doi.org/10.1126/science.aaa3952
Transcription-Dependent Generation of a Specialized Chromatin Structure at the TCRβ Locus2015-04-01Zacarías-Cabeza, J; Belhocine, M; Vanhille, L; Cauchy, P; Koch, F; Pekowska, A; Fenouil, R; Bergon, A; Gut, M; Gut, I; Eick, D; Imbert, J; Ferrier, P; (2015). Transcription-Dependent Generation of a Specialized Chromatin Structure at the TCRβ Locus. Journal Of Immunology, 194(7), 3432-3443. DOI: 10.4049/jimmunol.1400789https://doi.org/10.4049/jimmunol.1400789
Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers2015-04-01Agirre, X; Castellano, G; Pascual, M; Heath, S; Kulis, M; Segura, V; Bergmann, A; Esteve, A; Merkel, A; Raineri, E; Agueda, L; Blanc, J; Richardson, D (2015). Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers. Genome Research, 25(4), 478-487. DOI: 10.1101/gr.180240.114https://doi.org/10.1101/gr.180240.114
Ligand-Target Prediction by Structural Network Biology Using nAnnoLyze2015-03-27Martínez-Jiménez, F; Marti-Renom, MA (2015). Ligand-Target Prediction by Structural Network Biology Using nAnnoLyze. Plos Computational Biology, 11(3), e1004157-. DOI: 10.1371/journal.pcbi.1004157https://doi.org/10.1371/journal.pcbi.1004157
Early-onset chronic axonal neuropathy, strokes, and hemolysis Inherited CD59 deficiency2015-03-24Haliloglu, G; Maluenda, J; Sayinbatur, B; Aumont, C; Temucin, C; Tavil, B; Cetin, M; Oguz, KK; Gut, I; Picard, V; Melki, J; Topaloglu, H (2015). Early-onset chronic axonal neuropathy, strokes, and hemolysis Inherited CD59 deficiency. Neurology, 84(12), 1220-1224. DOI: 10.1212/WNL.0000000000001391https://doi.org/10.1212/WNL.0000000000001391
Colorectal Adenomas Contain Multiple Somatic Mutations That Do Not Coincide with Synchronous Adenocarcinoma Specimens2015-03-16Vaque, JP; Martinez, N; Varela, I; Fernandez, F; Mayorga, M; Derdak, S; Beltran, S; Moreno, T; Almaraz, C; De las Heras, G; Bayes, M; Gut, I; Crespo, (2015). Colorectal Adenomas Contain Multiple Somatic Mutations That Do Not Coincide with Synchronous Adenocarcinoma Specimens. Plos One, 10(3), e0119946-. DOI: 10.1371/journal.pone.0119946https://doi.org/10.1371/journal.pone.0119946
Epigenetic remodeling in B-cell acute lymphoblastic leukemia occurs in two tracks and employs embryonic stem cell-like signatures2015-03-11Lee, ST; Muench, MO; Fomin, ME; Xiao, JQ; Zhou, M; de Smith, A; Martín-Subero, JI; Heath, S; Houseman, EA; Roy, R; Wrensch, M; Wiencke, J; Metayer, C; (2015). Epigenetic remodeling in B-cell acute lymphoblastic leukemia occurs in two tracks and employs embryonic stem cell-like signatures. Nucleic Acids Research, 43(5), 2590-2602. DOI: 10.1093/nar/gkv103https://doi.org/10.1093/nar/gkv103
Case-control genome-wide association study of persistent attention-deficit hyperactivity disorder identifies FBXO33 as a novel susceptibility gene for the disorder.2015-03-01Sánchez-Mora, C; Ramos-Quiroga, JA; Bosch, R; Corrales, M; Garcia-Martínez, I; Nogueira, M; Pagerols, M; Palomar, G; Richarte, V; Vidal, R; Arias-Vasq (2015). Case-control genome-wide association study of persistent attention-deficit hyperactivity disorder identifies FBXO33 as a novel susceptibility gene for the disorder.. Neuropsychopharmacology, 40(4), 915-926. DOI: 10.1038/npp.2014.267https://doi.org/10.1038/npp.2014.267
Involvement of a citrus meiotic recombination TTC-repeat motif in the formation of gross deletions generated by ionizing radiation and MULE activation2015-02-13Terol, J; Ibañez, V; Carbonell, J; Alonso, R; Estornell, LH; Licciardello, C; Gut, IG; Dopazo, J; Talon, M (2015). Involvement of a citrus meiotic recombination TTC-repeat motif in the formation of gross deletions generated by ionizing radiation and MULE activation. Bmc Genomics, 16(1), 69-. DOI: 10.1186/s12864-015-1280-3https://doi.org/10.1186/s12864-015-1280-3
Joint Analysis of Psychiatric Disorders Increases Accuracy of Risk Prediction for Schizophrenia, Bipolar Disorder, and Major Depressive Disorder2015-02-05Maier, R; Moser, G; Chen, GB; Ripke, S; Coryell, W; Potash, JB; Scheftner, WA; Shi, JX; Weissman, MM; Hultman, CM; Landén, M; Levinson, DF; Kendler, K (2015). Joint Analysis of Psychiatric Disorders Increases Accuracy of Risk Prediction for Schizophrenia, Bipolar Disorder, and Major Depressive Disorder. American Journal Of Human Genetics, 96(2), 283-294. DOI: 10.1016/j.ajhg.2014.12.006https://doi.org/10.1016/j.ajhg.2014.12.006
Whole-exome sequencing identifies rare pathogenic variants in new predisposition genes for familial colorectal cancer2015-02-05Esteban-Jurado, C; Vila-Casadesús, M; Garre, P; Lozano, JJ; Pristoupilova, A; Beltran, S; Muñoz, J; Ocaña, T; Balaguer, F; López-Cerón, M; Cuatrecasas (2015). Whole-exome sequencing identifies rare pathogenic variants in new predisposition genes for familial colorectal cancer. Genetics In Medicine, 17(2), 131-142. DOI: 10.1038/gim.2014.89https://doi.org/10.1038/gim.2014.89
Genome data from a sixteenth century pig illuminate modern breed relationships2015-02-01Ramírez, O; Burgos-Paz, W; Casas, E; Ballester, M; Bianco, E; Olalde, I; Santpere, G; Novella, V; Gut, M; Lalueza-Fox, C; Saña, M; Pérez-Enciso, M (2015). Genome data from a sixteenth century pig illuminate modern breed relationships. Heredity, 114(2), 175-184. DOI: 10.1038/hdy.2014.81https://doi.org/10.1038/hdy.2014.81
Psychiatric genome-wide association study analyses implicate neuronal, immune and histone pathways2015-02-01O'Dushlaine, C; Rossin, L; Lee, PH; Duncan, L; Parikshak, NN; Newhouse, S; Ripke, S; Neale, BM; Purcell, SM; Posthuma, D; Nurnberger, JI; Lee, SH; Far (2015). Psychiatric genome-wide association study analyses implicate neuronal, immune and histone pathways. Nature Neuroscience, 18(2), 199-209. DOI: 10.1038/nn.3922https://doi.org/10.1038/nn.3922
Genomics of Ecological Adaptation in Cactophilic Drosophila2015-01-01Guillén, Y; Rius, N; Delprat, A; Williford, A; Muyas, F; Puig, M; Casillas, S; Ràmia, M; Egea, R; Negre, B; Mir, G; Camps, J; Moncunill, V; Ruiz-Ruano (2015). Genomics of Ecological Adaptation in Cactophilic Drosophila. Genome Biology And Evolution, 7(1), 349-366. DOI: 10.1093/gbe/evu291https://doi.org/10.1093/gbe/evu291