TitleDateAuthorsDOI
MetaTrans: An open-source pipeline for metatranscriptomics2016-05-23Martinez, X; Pozuelo, M; Pascal, V; Campos, D; Gut, I; Gut, M; Azpiroz, F; Guarner, F; Manichanh, C (2016). MetaTrans: An open-source pipeline for metatranscriptomics. Scientific Reports, 6(), 26447-. DOI: 10.1038/srep26447https://doi.org/10.1038/srep26447
Dynamic recruitment of Ets1 to both nucleosome-occupied and -depleted enhancer regions mediates a transcriptional program switch during early T-cell differentiation2016-05-05Cauchy, P; Maqbool, MA; Zacarias-Cabeza, J; Vanhille, L; Koch, F; Fenouil, R; Gut, M; Gut, I; Santana, MA; Griffon, A; Imbert, J; Moraes-Cabé, C; Bori (2016). Dynamic recruitment of Ets1 to both nucleosome-occupied and -depleted enhancer regions mediates a transcriptional program switch during early T-cell differentiation. Nucleic Acids Research, 44(8), 3567-3585. DOI: 10.1093/nar/gkv1475https://doi.org/10.1093/nar/gkv1475
Functional Implications of Human-Specific Changes in Great Ape microRNAs2016-04-22Gallego, A; Melé, M; Balcells, I; García-Ramallo, E; Torruella-Loran, I; Fernández-Bellon, H; Abelló, T; Kondova, I; Bontrop, R; Hvilsom, C; Navarro, (2016). Functional Implications of Human-Specific Changes in Great Ape microRNAs. Plos One, 11(4), e0154194-. DOI: 10.1371/journal.pone.0154194https://doi.org/10.1371/journal.pone.0154194
RNA sequencing validation of the Complexity INdex in SARComas prognostic signature2016-04-01Lesluyes, T; Pérot, G; Largeau, MR; Brulard, C; Lagarde, P; Dapremont, V; Lucchesi, C; Neuville, A; Terrier, P; Vince-Ranchère, D; Mendez-Lago, M; Gut (2016). RNA sequencing validation of the Complexity INdex in SARComas prognostic signature. European Journal Of Cancer, 57(), 104-11. DOI: 10.1016/j.ejca.2015.12.027https://doi.org/10.1016/j.ejca.2015.12.027
Identification of genetic variation in the swine toll-like receptors and development of a porcine TLR genotyping array.2016-03-31Clop, A; Huisman, A; van As, P; Sharaf, A; Derdak, S; Sanchez, A (2016). Identification of genetic variation in the swine toll-like receptors and development of a porcine TLR genotyping array.. Genetics Selection Evolution, 48(28), 28-28. DOI: 10.1186/s12711-016-0206-0https://doi.org/10.1186/s12711-016-0206-0
The Fungus Candida albicans Tolerates Ambiguity at Multiple Codons2016-03-31Simoes, J; Bezerra, AR; Moura, GR; Araújo, H; Gut, I; Bayes, M; Santos, MAS (2016). The Fungus Candida albicans Tolerates Ambiguity at Multiple Codons. Frontiers In Microbiology, 7(MAR), 401-401. DOI: 10.3389/fmicb.2016.00401https://doi.org/10.3389/fmicb.2016.00401
Biological insertion of computationally designed short transmembrane segments2016-03-18Baeza-Delgado, C; von Heijne, G; Marti-Renom, MA; Mingarro, I (2016). Biological insertion of computationally designed short transmembrane segments. Scientific Reports, 6(), 23397-. DOI: 10.1038/srep23397https://doi.org/10.1038/srep23397
Chromatin and RNA maps reveal regulatory long noncoding RNAs in mouse2016-03-01Bogu, GK; Vizán, P; Stanton, LW; Beato, M; Di Croce, L; Marti-Renom, MA (2016). Chromatin and RNA maps reveal regulatory long noncoding RNAs in mouse. Molecular And Cellular Biology, 36(5), 809-819. DOI: 10.1128/MCB.00955-15https://doi.org/10.1128/MCB.00955-15
Evaluation of mRNA markers for estimating blood deposition time: Towards alibi testing from human forensic stains with rhythmic biomarkers2016-03-01Lech, K; Liu, F; Ackermann, K; Revell, VL; Lao, O; Skene, DJ; Kayser, M (2016). Evaluation of mRNA markers for estimating blood deposition time: Towards alibi testing from human forensic stains with rhythmic biomarkers. Forensic Science International-Genetics, 21(), 119-125. DOI: 10.1016/j.fsigen.2015.12.008https://doi.org/10.1016/j.fsigen.2015.12.008
Genetic Load of Loss-of-Function Polymorphic Variants in Great Apes2016-03-01de Valles-Ibáñez, G; Hernandez-Rodriguez, J; Prado-Martinez, J; Luisi, P; Marquès-Bonet, T; Casals, F (2016). Genetic Load of Loss-of-Function Polymorphic Variants in Great Apes. Genome Biology And Evolution, 8(3), 871-7. DOI: 10.1093/gbe/evw040https://doi.org/10.1093/gbe/evw040
Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs2016-03-01Freedman, AH; Schweizer, RM; Ortega-Del Vecchyo, D; Han, EJ; Davis, BW; Gronau, I; Silva, PM; Galaverni, M; Fan, ZX; Marx, P; Lorente-Galdos, B; Ramir (2016). Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs. Plos Genetics, 12(3), e1005851-e1005851. DOI: 10.1371/journal.pgen.1005851https://doi.org/10.1371/journal.pgen.1005851
Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes2016-02-25Vlasova, A; Capella-Gutiérrez, S; Rendón-Anaya, M; Hernández-Oñate, M; Minoche, AE; Erb, I; Câmara, F; Prieto-Barja, P; Corvelo, A; Sanseverino, W; We (2016). Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes. Genome Biology, 17(1), 32-. DOI: 10.1186/s13059-016-0883-6https://doi.org/10.1186/s13059-016-0883-6
Ancient gene flow from early modern humans into Eastern Neanderthals2016-02-25Kuhlwilm, M; Gronau, I; Hubisz, MJ; de Filippo, C; Prado-Martinez, J; Kircher, M; Fu, QM; Burbano, HA; Lalueza-Fox, C; de la Rasilla, M; Rosas, A; Rud (2016). Ancient gene flow from early modern humans into Eastern Neanderthals. Nature, 530(7591), 429-33. DOI: 10.1038/nature16544https://doi.org/10.1038/nature16544
Genome-wide nucleosome specificity and function of chromatin remodellers in ES cells2016-02-04de Dieuleveult, M; Yen, KY; Hmitou, I; Depaux, A; Oussouar, FB; Dargham, DB; Jounier, S; Humbertclaude, H; Ibierre, FR; Baulard, C; Farrell, NP; Park, (2016). Genome-wide nucleosome specificity and function of chromatin remodellers in ES cells. Nature, 530(7588), 113-6. DOI: 10.1038/nature16505https://doi.org/10.1038/nature16505
Dissecting Daily and Circadian Expression Rhythms of Clock-Controlled Genes in Human Blood2016-02-01Lech, K; Ackermann, K; Revell, VL; Lao, O; Skene, DJ; Kayser, M (2016). Dissecting Daily and Circadian Expression Rhythms of Clock-Controlled Genes in Human Blood. Journal Of Biological Rhythms, 31(1), 68-81. DOI: 10.1177/0748730415611761https://doi.org/10.1177/0748730415611761
Worldwide patterns of genomic variation and admixture in gray wolves2016-02-01Fan, ZX; Silva, P; Gronau, I; Wang, SG; Armero, AS; Schweizer, RM; Ramirez, O; Pollinger, J; Galaverni, M; Del-Vecchyo, DO; Du, LM; Zhang, WP; Zhang, (2016). Worldwide patterns of genomic variation and admixture in gray wolves. Genome Research, 26(2), 163-73. DOI: 10.1101/gr.197517.115https://doi.org/10.1101/gr.197517.115
Epigenomic analysis detects aberrant super-enhancer DNA methylation in human cancer2016-01-26Heyn, H; Vidal, E; Ferreira, HJ; Vizoso, M; Sayols, S; Gomez, A; Moran, S; Boque-Sastre, R; Guil, S; Martinez-Cardus, A; Lin, CY; Royo, R; Sanchez-Mut (2016). Epigenomic analysis detects aberrant super-enhancer DNA methylation in human cancer. Genome Biology, 17(1), 11-. DOI: 10.1186/s13059-016-0879-2https://doi.org/10.1186/s13059-016-0879-2
Selective constraints on protamine 2 in primates and rodents2016-01-22Lüke, L; Tourmente, M; Dopazo, H; Serra, F; Roldan, ERS (2016). Selective constraints on protamine 2 in primates and rodents. Bmc Evolutionary Biology, 16(1), 21-. DOI: 10.1186/s12862-016-0588-1https://doi.org/10.1186/s12862-016-0588-1
Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs2016-01-05Marsden, CD; Ortega-Del Vecchyo, D; O'Brien, DP; Taylor, JF; Ramirez, O; Vilà, C; Marques-Bonet, T; Schnabel, RD; Wayne, RK; Lohmueller, KE (2016). Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs. Proceedings Of The National Academy Of Sciences Of The United States Of America, 113(1), 152-157. DOI: 10.1073/pnas.1512501113https://doi.org/10.1073/pnas.1512501113
Dynamic recruitment of Ets1 to both nucleosome-occupied and -depleted enhancer regions mediates a transcriptional program switch during early T-cell differentiation2016-01-01Cauchy P, Maqbool MA, Zacarias-Cabeza J, Vanhille L, Koch F, Fenouil R, Gut M, Gut I, Santana MA, Griffon A, Imbert J, Moraes-Cabé C, Bories JC, Ferri (2016). Dynamic recruitment of Ets1 to both nucleosome-occupied and -depleted enhancer regions mediates a transcriptional program switch during early T-cell differentiation. Nucleic Acids Research, 44(8), 3567-85https://doi.org/10.1093/nar/gkv1475