TitleDateAuthorsDOI
Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform2020-08-01Sandoval-Velasco, M; Rodríguez, JA; Estrada, CP; Zhang, GJ; Aiden, EL; Marti-Renom, MA; Gilbert, MTP; Smith, O (2020). Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform. Gigascience, 9(8), giaa087-. DOI: 10.1093/gigascience/giaa087https://doi.org/10.1093/gigascience/giaa087
Targeted conservation genetics of the endangered chimpanzee2020-08-01Frandsen, P; Fontsere, C; Nielsen, SV; Hanghoj, K; Castejon-Fernandez, N; Lizano, E; Hughes, D; Hernandez-Rodriguez, J; Korneliussen, TS; Carlsen, F; (2020). Targeted conservation genetics of the endangered chimpanzee. Heredity, 125(1-2), 15-27. DOI: 10.1038/s41437-020-0313-0https://doi.org/10.1038/s41437-020-0313-0
Immune Cell Associations with Cancer Risk2020-07-24Palomero, L; Galván-Femenía, I; de Cid, R; Espín, R; Barnes, DR; Blommaert, E; Gil-Gil, M; Falo, C; Stradella, A; Ouchi, D; Roso-Llorach, A; Violan, C (2020). Immune Cell Associations with Cancer Risk. Iscience, 23(7), 101296-. DOI: 10.1016/j.isci.2020.101296https://doi.org/10.1016/j.isci.2020.101296
Tumor Necrosis Factor Receptor SF10A (TNFRSF10A) SNPs Correlate With Corticosteroid Response in Duchenne Muscular Dystrophy2020-07-03Passarelli, C; Selvatici, R; Carrieri, A; Di Raimo, FR; Falzarano, MS; Fortunato, F; Rossi, R; Straub, V; Bushby, K; Reza, M; Zharaieva, I; D'Amico, A (2020). Tumor Necrosis Factor Receptor SF10A (TNFRSF10A) SNPs Correlate With Corticosteroid Response in Duchenne Muscular Dystrophy. Frontiers In Genetics, 11(), 605-. DOI: 10.3389/fgene.2020.00605https://doi.org/10.3389/fgene.2020.00605
A SMAD1/5-YAP signaling module drives radial glia self-amplification and growth of the developing cerebral cortex2020-07-01Najas, S; Pijuan, I; Esteve-Codina, A; Usieto, S; Martinez, JD; Zwijsen, A; Arbonés, ML; Martí, E; Le Dréau, G (2020). A SMAD1/5-YAP signaling module drives radial glia self-amplification and growth of the developing cerebral cortex. Development, 147(13), dev187005-. DOI: 10.1242/dev.187005https://doi.org/10.1242/dev.187005
CTCF is dispensable for immune cell transdifferentiation but facilitates an acute inflammatory response2020-07-01Stik, G; Vidal, E; Barrero, M; Cuartero, S; Vila-Casadesus, M; Mendieta-Esteban, J; Tian, TV; Choi, J; Berenguer, C; Abad, A; Borsari, B; le Dily, F; (2020). CTCF is dispensable for immune cell transdifferentiation but facilitates an acute inflammatory response. Nature Genetics, 52(7), 655-+. DOI: 10.1038/s41588-020-0643-0https://doi.org/10.1038/s41588-020-0643-0
Use of patient derived orthotopic xenograft models for real-time therapy guidance in a pediatric sporadic malignant peripheral nerve sheath tumor2020-07-01Fernández-Rodríguez, J; La Madrid, AM; Gel, B; Heredia, AC; Salvador, H; Martínez-Iniesta, M; Moutinho, C; Morata, J; Heyn, H; Blanco, I; Creus-Bachil (2020). Use of patient derived orthotopic xenograft models for real-time therapy guidance in a pediatric sporadic malignant peripheral nerve sheath tumor. Therapeutic Advances In Medical Oncology, 12(), 1758835920929579-. DOI: 10.1177/1758835920929579https://doi.org/10.1177/1758835920929579
Arctic-adapted dogs emerged at the Pleistocene-Holocene transitiond2020-06-26Sinding, MHS; Gopalakrishnan, S; Ramos-Madrigal, J; de Manuel, M; Pitulko, VV; Kuderna, L; Feuerborn, TR; Frantz, LAF; Vieira, FG; Niemann, J; Castrui (2020). Arctic-adapted dogs emerged at the Pleistocene-Holocene transitiond. Science, 368(6498), 1495-+. DOI: 10.1126/science.aaz8599https://doi.org/10.1126/science.aaz8599
Active and repressed biosynthetic gene clusters have spatially distinct chromosome states2020-06-16Nützmann, HW; Doerr, D; Ramírez-Colmenero, A; Sotelo-Fonseca, JE; Wegel, E; Di Stefano, M; Wingett, SW; Fraser, P; Hurst, L; Fernandez-Valverde, SL; O (2020). Active and repressed biosynthetic gene clusters have spatially distinct chromosome states. Proceedings Of The National Academy Of Sciences Of The United States Of America, 117(24), 13800-13809. DOI: 10.1073/pnas.1920474117https://doi.org/10.1073/pnas.1920474117
Zonation of Ribosomal DNA Transcription Defines a Stem Cell Hierarchy in Colorectal Cancer2020-06-04Morral, C; Stanisavljevic, J; Hernando-Momblona, X; Mereu, E; Alvarez-Varela, A; Cortina, C; Stork, D; Slebe, F; Turon, G; Whissell, G; Sevillano, M; (2020). Zonation of Ribosomal DNA Transcription Defines a Stem Cell Hierarchy in Colorectal Cancer. Cell Stem Cell, 26(6), 845-+. DOI: 10.1016/j.stem.2020.04.012https://doi.org/10.1016/j.stem.2020.04.012
Benchmarking single-cell RNA-sequencing protocols for cell atlas projects2020-06-01Mereu, E; Lafzi, A; Moutinho, C; Ziegenhain, C; McCarthy, DJ; Alvarez-Varela, A; Batlle, E; Sagar; Grün, D; Lau, JK; Boutet, SC; Sanada, C; Ooi, A; Jo (2020). Benchmarking single-cell RNA-sequencing protocols for cell atlas projects. Nature Biotechnology, 38(6), 747-+. DOI: 10.1038/s41587-020-0469-4https://doi.org/10.1038/s41587-020-0469-4
Metagenomic analysis of a blood stain from the French revolutionary Jean-Paul Marat (1743-1793)2020-06-01de-Dios, T; van Dorp, L; Charlier, P; Morfopoulou, S; Lizano, E; Bon, C; Le Bitouzé, C; Alvarez-Estape, M; Marquès-Bonet, T; Balloux, F; Lalueza-Fox, (2020). Metagenomic analysis of a blood stain from the French revolutionary Jean-Paul Marat (1743-1793). Infection Genetics And Evolution, 80(), 104209-. DOI: 10.1016/j.meegid.2020.104209https://doi.org/10.1016/j.meegid.2020.104209
Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings2020-05-26Almudi, I; Vizueta, J; Wyatt, CDR; de Mendoza, A; Marlétaz, F; Firbas, PN; Feuda, R; Masiero, G; Medina, P; Alcaina-Caro, A; Cruz, F; Gómez-Garrido, J (2020). Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings. Nature Communications, 11(1), 2631-. DOI: 10.1038/s41467-020-16284-8https://doi.org/10.1038/s41467-020-16284-8
Genomic analysis of the natural history of attention-deficit/hyperactivity disorder using Neanderthal and ancient Homo sapiens samples2020-05-25Esteller-Cucala, P; Maceda, I; Borglum, AD; Demontis, D; Faraone, SV; Cormand, B; Lao, O (2020). Genomic analysis of the natural history of attention-deficit/hyperactivity disorder using Neanderthal and ancient Homo sapiens samples. Scientific Reports, 10(1), 8622-. DOI: 10.1038/s41598-020-65322-4https://doi.org/10.1038/s41598-020-65322-4
Transcriptional activation during cell reprogramming correlates with the formation of 3D open chromatin hubs2020-05-22Di Stefano, M; Stadhouders, R; Farabella, I; Castillo, D; Serra, F; Graf, T; Marti-Renom, MA (2020). Transcriptional activation during cell reprogramming correlates with the formation of 3D open chromatin hubs. Nature Communications, 11(1), 2564-. DOI: 10.1038/s41467-020-16396-1https://doi.org/10.1038/s41467-020-16396-1
Extreme differences between human germline and tumor mutation densities are driven by ancestral human-specific deviations2020-05-19Heredia-Genestar, JM; Marquès-Bonet, T; Juan, D; Navarro, A (2020). Extreme differences between human germline and tumor mutation densities are driven by ancestral human-specific deviations. Nature Communications, 11(1), 2512-. DOI: 10.1038/s41467-020-16296-4https://doi.org/10.1038/s41467-020-16296-4
The evolutionary history of extinct and living lions2020-05-19de Manuel, M; Barnett, R; Sandoval-Velasco, M; Yamaguchi, N; Vieira, FG; Mendoza, MLZ; Liu, SP; Martin, MD; Sinding, MHS; Mak, SST; Caroe, C; Liu, SL; (2020). The evolutionary history of extinct and living lions. Proceedings Of The National Academy Of Sciences Of The United States Of America, 117(20), 10927-10934. DOI: 10.1073/pnas.1919423117https://doi.org/10.1073/pnas.1919423117
Sampling time-dependent artifacts in single-cell genomics studies2020-05-11Massoni-Badosa, R; Iacono, G; Moutinho, C; Kulis, M; Palau, N; Marchese, D; Rodríguez-Ubreva, J; Ballestar, E; Rodriguez-Esteban, G; Marsal, S; Aymeri (2020). Sampling time-dependent artifacts in single-cell genomics studies. Genome Biology, 21(1), 112-. DOI: 10.1186/s13059-020-02032-0https://doi.org/10.1186/s13059-020-02032-0
Using GARDEN-NET and ChAseR to explore human haematopoietic 3D chromatin interaction networks2020-05-07Madrid-Mencía, M; Raineri, E; Cao, TBN; Pancaldi, V (2020). Using GARDEN-NET and ChAseR to explore human haematopoietic 3D chromatin interaction networks. Nucleic Acids Research, 48(8), 4066-4080. DOI: 10.1093/nar/gkaa159https://doi.org/10.1093/nar/gkaa159
4D Genome Rewiring during Oncogene-Induced and Replicative Senescence2020-05-07Sati, S; Bonev, B; Szabo, Q; Jost, D; Bensadoun, P; Serra, F; Loubiere, V; Papadopoulos, GL; Rivera-Mulia, JC; Fritsch, L; Bouret, P; Castillo, D; Gel (2020). 4D Genome Rewiring during Oncogene-Induced and Replicative Senescence. Molecular Cell, 78(3), 522-+. DOI: 10.1016/j.molcel.2020.03.007https://doi.org/10.1016/j.molcel.2020.03.007